PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG304100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 750aa    MW: 87688.4 Da    PI: 9.2694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG304100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423.1e-1351131290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y++  GFsv k +++k+      +k  ++C+k+ ++ e k+   k+r++++++ t+Ck ++ v +e + +w+ t+++l HnH+l+
  Pavir.7NG304100.1.p  51 FVNIYGQLNGFSVFKGRNYKN------KKVFLMCNKSKRAVEPKNP-AKKRKRSVVKGTSCKMQIIVVLE-QMRWKFTDVDLVHNHPLV 131
                          7789****************9......46789***99888887777.999*******************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-1151131IPR004330FAR1 DNA binding domain
PfamPF105511.8E-33255348IPR018289MULE transposase domain
PROSITE profilePS509669.409538574IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-4544573IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4549576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MQGGTEISED EGEDGIADNE EYLFPDPDEA EGLKKPAVGM SFDTLKEAHR FVNIYGQLNG  60
FSVFKGRNYK NKKVFLMCNK SKRAVEPKNP AKKRKRSVVK GTSCKMQIIV VLEQMRWKFT  120
DVDLVHNHPL VSSPSLTKFF INHRYMTEEE KKFSRILQEA RIKPRRIMQI FRKMKGNFKY  180
MNFGRTQLKN LKQANRQNKI RNTDIDSTML FVKKLQKEQP GFYYTMRTDE ENTVKSIFWT  240
ASASRLNYKL YGDFVSFDTT FSTNKYNMPF APLVGINGHG RTIVFGYALL ENQKAETFSW  300
LFNTLLEAMD GKKPELIITD QDAAMKKAIS EIFGSDIHRN CFWHIMRNAR ENLGTYLKER  360
PGMAEDLERV IYGSISKEEF DEGWKEILEK YDAKENGTLK LMWKCRSMWA PAYFMDVFCP  420
FIKTTGRSES TNSSFKDYVM RKDSIETFLQ QCQIYEEEQA EIERRDRFES NVQEPVYATM  480
QMIERHAAQV YTRNIYLRFQ MELYNSSAYS LEEEESWAKY KVHRLMDHDK IEFYRRTFYI  540
EVDKDANTFS CICKKYQRDG ILCCHILRLF THLGIYRIPE NYIKLRWTKD YLETELRSQK  600
KKEMEQFGKC NDEPVLRHAM MMNSLSDMCS KVCKDKEKSE EFMRQVENIF ERIGCQGEAG  660
KESDVGSYKD PPVIQTVSVD KGHRLVRPSE QSAKEKRDAE KAAKKAKTTG KKNETEEPNT  720
KKIGVKTGAT KAKKKSTKTH GEVDDVTQM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694PKNPAKKRK
29196KKRKRS
3159167ARIKPRRIM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG304100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825589.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0A9T3X60.0A0A0A9T3X6_ARUDO; Uncharacterized protein
STRINGPavir.J08131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-85FAR1-related sequence 5