PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG307200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 403aa    MW: 42981 Da    PI: 6.6461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG307200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.71.3e-2991182187
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  
  Pavir.7NG307200.1.p  91 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGa 180
                          89***************************955556888************************************************8543 PP

                          SS CS
                   B3  86 gr 87 
                          g+
  Pavir.7NG307200.1.p 181 GE 182
                          44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-4181201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-2888179IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-2589176No hitNo description
PROSITE profilePS5086313.77591196IPR003340B3 DNA binding domain
PfamPF023629.0E-2791194IPR003340B3 DNA binding domain
SMARTSM010191.4E-2091196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEFASSLSRF SKEEDEEEEQ EEEEEASPRE IPFMAAAATA TTGGAASSSS SPPAAPSASG  60
SAALRSSEGA GASGGGGGSD DVEVIEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD  120
AAANEKGLLL SFEDRAGKLW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFCRGA  180
GEAARDRLFI DWKRRADSRD PHRMPRLPLP MAPVASPYGP WGGGAGGFFM PTAPPATLYE  240
HHRFRQGLDF RNINAAAPAR QLLFFGSAGM PPRASMPPPP PPQPPRNIMM VQPSPVVTAG  300
LPMVLDSVPL VNSPTAAAKR VRLFGVNLDN PQPSGGESSQ DTNALSLRMP GWQRPGPWRF  360
LESPQHGAGV GATGGAESSA ASSPSSSSSS KREAHSSLDL DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-61861953113B3 domain-containing transcription factor NGA1
5os9_B3e-61861953113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG307200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976592.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-131Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A1E5V6G80.0A0A1E5V6G8_9POAL; B3 domain-containing protein
STRINGSi011823m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-62B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]