PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG322100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 271aa    MW: 31547.3 Da    PI: 8.8546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG322100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.61.6e-2319100286
             trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W  qe+++Li ar e+e++ ++ ++++k  We+v++++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f +l+
  Pavir.7NG322100.1.p  19 WGAQETRELIVARGEVEREANAaRRSAKSMWEAVAARLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFPELH 100
                          *********************835799************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.411176IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-41877IPR009057Homeodomain-like
PfamPF138372.8E-2118101No hitNo description
CDDcd122031.96E-161983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMEAGGGGAG GRDERVPPWG AQETRELIVA RGEVEREANA ARRSAKSMWE AVAARLRERG  60
YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFPELH AVFTERARNM QRQLLESEPG  120
ASVKRKLKRP SGDRSSGESD GEDGGVESQD EEPMHSRKRK ADDKKQQSQR MPEKSRTGVS  180
SIHELLQDFL AQQQRIDIQW QETVERRAQE RIVFEQEWRQ TMQNLEQERL MLEHSWMQRE  240
EQRRMREEAR AEKRDALLTT LLNKLLQEDL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.95510.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG322100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-145trihelix transcription factor GT-3b
RefseqXP_025824197.11e-143uncharacterized protein LOC112899804
TrEMBLA0A2T7CZK31e-151A0A2T7CZK3_9POAL; Uncharacterized protein
STRINGPavir.Gb00773.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-28Trihelix family protein