PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG346400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 355aa MW: 38929.7 Da PI: 8.2724

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG346400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.6	1.9e-09	60	174	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 F+P ++lv +yL ++ + + +l i+++d+y ++P L + +++ + ew fF++r + +r + g + tg+ k+ Pavir.7NG346400.1.p 60 FDPAPDDLVGRYLPARRALRCGDLPPQIHDADVYGAHPAFLARvhpPANGARPEWLFFVCRGRGLG----GKRRAGPGAYRLTGEAKPGG 145 9**********99988877777667**********743443334555****99654....4455678****87755 PP NAM 94 skkgelvglkktLvfykg..rapkgektdWvmhey 126 + + + + +y+ +a+ +++t+W m+ey Pavir.7NG346400.1.p 146 A------WYCHCFRYYEDavEASAARETKWRMEEY 174 4......888995434899999******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.005	54	195	IPR003441	NAC domain
Pfam	PF02365	7.9E-6	59	174	IPR003441	NAC domain
SuperFamily	SSF101941	1.26E-17	59	193	IPR003441	NAC domain
PROSITE profile	PS51005	8.704	209	347	IPR003441	NAC domain
SuperFamily	SSF101941	6.28E-17	220	345	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MKQAASSSAP SAGPREDETV DDGWVLLDAG GSSDTAAGAR PPRPPLRGGN RPPAGAQTPF 60 DPAPDDLVGR YLPARRALRC GDLPPQIHDA DVYGAHPAFL ARVHPPANGA RPEWLFFVCR 120 GRGLGGKRRA GPGAYRLTGE AKPGGAWYCH CFRYYEDAVE ASAARETKWR MEEYGDRCPG 180 GAGAFDVVVC KVFPARGGAL DGRLRLDAAA RRAGADVRPQ VLVQLYLASL SAGDPLRGRM 240 HRAADVCAAH PAVLTAVLPP ANDQFEWFFV VRRQPTEHLG MRYWGVTDGE GRELGYRRLF 300 WYREDDEQVR RTSRTVWSME EYGFGPDFPY GEHGGDKELV VYKVHQRMAR QQDA*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MKQAASSSAP SAGPREDETV DDGWVLLDAG GSSDTAAGAR PPRPPLRGGN RPPAGAQTPF  60
DPAPDDLVGR YLPARRALRC GDLPPQIHDA DVYGAHPAFL ARVHPPANGA RPEWLFFVCR  120
GRGLGGKRRA GPGAYRLTGE AKPGGAWYCH CFRYYEDAVE ASAARETKWR MEEYGDRCPG  180
GAGAFDVVVC KVFPARGGAL DGRLRLDAAA RRAGADVRPQ VLVQLYLASL SAGDPLRGRM  240
HRAADVCAAH PAVLTAVLPP ANDQFEWFFV VRRQPTEHLG MRYWGVTDGE GRELGYRRLF  300
WYREDDEQVR RTSRTVWSME EYGFGPDFPY GEHGGDKELV VYKVHQRMAR QQDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG346400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825360.1	0.0	uncharacterized protein LOC112900773
TrEMBL	A0A2T8ID37	0.0	A0A2T8ID37_9POAL; Uncharacterized protein
STRING	Pavir.Gb01277.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14767	18	19

Link Out ? help Back to Top
Phytozome	Pavir.7NG346400.1.p