PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG352600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 285aa    MW: 30564.3 Da    PI: 6.7728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG352600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-314713242128
                  NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + P+d     k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s    +++vg++ktLvfy+grap+g+k+ Wvmhe+rl
  Pavir.7NG352600.2.p  47 ASPSDAA---KLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaaPRAVVGMRKTLVFYRGRAPNGVKSCWVMHEFRL 132
                          5555553...33568*************************************98777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.5571151IPR003441NAC domain
PfamPF023652.3E-1549132IPR003441NAC domain
SuperFamilySSF1019418.37E-3854151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSPLIPTQAC LCLLVTILMA PFNPLPSYTS GMSNSHDSCL SSSSFKASPS DAAKLTASEW  60
YFFSFRDRKY ATGSRTNRAT KTGYWKATGK DREVRSPAAP RAVVGMRKTL VFYRGRAPNG  120
VKSCWVMHEF RLDSPQTPPK EDWVLCRVFQ KRKDGEQDNA AGSSSPTFAG SSSQAAAAMP  180
DDHRAVTDAY YVDHQAAGSS AGFAPPPQED VVGGFDDPLL MNAAMWQHGS VLDHFPPQEV  240
TSSPMMAGLG SSGVGDGCGG FYYDTGFEDM ANIGGMGFTQ GWMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-275115764171NO APICAL MERISTEM PROTEIN
1ut4_B1e-275115764171NO APICAL MERISTEM PROTEIN
1ut7_A1e-275115764171NO APICAL MERISTEM PROTEIN
1ut7_B1e-275115764171NO APICAL MERISTEM PROTEIN
3ulx_A1e-274515753174Stress-induced transcription factor NAC1
4dul_A1e-275115764171NAC domain-containing protein 19
4dul_B1e-275115764171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.85450.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG352600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170061e-147KM017006.1 Miscanthus lutarioriparius NAC8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824637.11e-149protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ84TE61e-38NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2T7CXR41e-148A0A2T7CXR4_9POAL; Uncharacterized protein
STRINGPavir.Gb00655.1.p1e-164(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-50NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]