PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG357200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 655aa    MW: 70630.1 Da    PI: 9.8784
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG357200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.9e-23143244199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF 
  Pavir.7NG357200.1.p 143 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQS--VYARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVNKKKLLAGDSIVFL 230
                          89*********************999****9976666675..************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + ++++ +v+++r+
  Pavir.7NG357200.1.p 231 --RGENGRVHVGLRRA 244
                          ..4489999***9996 PP
2Auxin_resp113.22.5e-37295378183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++d+ rWp+S+Wr+L+
  Pavir.7NG357200.1.p 295 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTISGVHAADSARWPQSPWRLLQ 378
                          678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-36133246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29136246IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-21142243No hitNo description
PROSITE profilePS5086312.647143245IPR003340B3 DNA binding domain
SMARTSM010195.6E-21143245IPR003340B3 DNA binding domain
PfamPF023626.0E-21143244IPR003340B3 DNA binding domain
PfamPF065072.5E-32295378IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MSAAACAPTP LGMLTLAHRM APPPPLEEEE PAPGAGEGCV DAQLWFACAG SMCTVPPVGA  60
AVYYFPQGHA EQASAAVDMS AARGVPPFVP CRVAAVSYMA EPHTDEVFAR IRLVPLRPGE  120
PVADAADADA GDDHQHQPKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYRAEPPV  180
QSVYARDVHG VEWTFRHIYR GTPRRHLLTT GWSNFVNKKK LLAGDSIVFL RGENGRVHVG  240
LRRAKRGFGV GGGDDGSPSL SVSGWDPYGN LVRGNAGGGA RSPSGKVPPE DVVAAARLAA  300
AGQPFEVVHY PRASTPEFCV RAAAVRASMQ VPWCPGMRFK MAFETEDSSR ISWFMGTISG  360
VHAADSARWP QSPWRLLQVT WDEPELLQNV KRVCPWLVEQ VSSMPNLHLP NFSPPPRKKQ  420
RIPEFPFEGQ PLFDPPFPPA RPLPPLAPHP HPHPHPHPLP FFPFPDGSAA AGIQGARHAQ  480
LAPFFSDLHT GNLQQSLLFC GVRPADHHAP AAPRISTDLA IGNPAAPPRR AALSTSCRQQ  540
GRRRQASGDN AFRAGDTDRG ADEEQQPDLV AGSHQEKVTQ HTGSLRLRLR RHRGQPCKEQ  600
PVGRGAGARA RARARAVQGL RGVGRRRPEP RPLGAGLVRG AARPPVPHVP DRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-753439945388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1603613RGAGARARARA
2624631RRRPEPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG357200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641441e-156AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822803.10.0auxin response factor 8-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A2T7CXL00.0A0A2T7CXL0_9POAL; Auxin response factor
TrEMBLA0A3L6Q3Z90.0A0A3L6Q3Z9_PANMI; Auxin response factor
STRINGPavir.Gb00635.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-156auxin response factor 16