PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG369100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 252aa    MW: 27587.9 Da    PI: 6.2246
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG369100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-29165219155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWt+e+H+rF++av+qLGG e+A Pk+il++m+v+gLt+++vkSHLQkY+l
  Pavir.7NG369100.3.p 165 KVRRRWTTEMHDRFIDAVNQLGGCENAKPKAILDIMNVEGLTRDQVKSHLQKYKL 219
                          679**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.923162222IPR017930Myb domain
SuperFamilySSF466896.63E-18163221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-28163220IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23165220IPR006447Myb domain, plants
PfamPF002494.2E-9167218IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMHGRFPNLL PSIVQSLNAE ILYSNPISHS GVSEQPLRGI FPGLPAETTH SADHLGGLLN  60
NNGIDSVEKQ PDSGSVRDPN ESDERDERLT CLGHGGLDDT IPADMTLNYP QMAESTHVSS  120
PLNSETWQLE HIVHQLVSVP TIPGQLYPTV SPPATINVHS PQRTKVRRRW TTEMHDRFID  180
AVNQLGGCEN AKPKAILDIM NVEGLTRDQV KSHLQKYKLA QVRHRSSEVG GTLVGTTTSN  240
EAIPSDVQMC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-18165223260Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG369100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825635.11e-161protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
TrEMBLA0A2T7CXL81e-163A0A2T7CXL8_9POAL; Uncharacterized protein
TrEMBLA0A2T8ID281e-163A0A2T8ID28_9POAL; Uncharacterized protein
STRINGPavir.J07757.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.47e-20G2-like family protein