PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG380200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 240aa    MW: 25526.6 Da    PI: 10.4333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG380200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-1770119255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Pavir.7NG380200.1.p  70 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 119
                          69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3069128IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2170129IPR016177DNA-binding domain
PROSITE profilePS5103222.58970127IPR001471AP2/ERF domain
PfamPF008472.6E-1070119IPR001471AP2/ERF domain
CDDcd000188.52E-2670128No hitNo description
SMARTSM003807.9E-3670133IPR001471AP2/ERF domain
PRINTSPR003676.2E-127182IPR001471AP2/ERF domain
PRINTSPR003676.2E-12109129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQGAYRSSSE ESAASPAAAA AAAAAAAAMA PLAAAAAAAV KMEEQAAAAA AMAAGTQAPA  60
PLQQMQPRRQ YRGVRMRKWG KWVAEIREPH KRTRIWLGSY ATPVAAARAY DTAVFYLRGR  120
SARLNFPDEI PALALAEGGG EPARGGDADG GTLSAASIRK KAIEVGSRVD ALQTGMMVAP  180
PHHRERQRHH HHHGLPQLQL HAEEEQRQQE QKQQRAAWSG RAKNPDLNRA PSPESSDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1469130466ATERF1
3gcc_A5e-1469130466ATERF1
5wx9_A6e-14701291474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41420.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG380200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680311e-154EU968031.1 Zea mays clone 313065 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.11e-102ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A2S3IAZ31e-100A0A2S3IAZ3_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.17e-39DREB and EAR motif protein 3