PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG381000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 242aa    MW: 26586.3 Da    PI: 10.0614
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG381000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-2092151357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++++eq+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  Pavir.7NG381000.1.p  92 TRWNPSPEQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 151
                          8*****************99**************************************97 PP
2Wus_type_Homeobox115.62.3e-3791153365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +tRW+P+peQik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
  Pavir.7NG381000.1.p  91 TTRWNPSPEQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 153
                          79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.10687152IPR001356Homeobox domain
SMARTSM003898.5E-889156IPR001356Homeobox domain
SuperFamilySSF466896.42E-1390157IPR009057Homeodomain-like
PfamPF000467.5E-1892151IPR001356Homeobox domain
CDDcd000861.26E-592153No hitNo description
Gene3DG3DSA:1.10.10.603.0E-892151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRLHHFLAVA YLDKAASPSP SSSPPSISSP SLTLSSSAAI PLGALQCLRP LAPKISFPEP  60
RKMVVLPELA RVRNAARLLH CTLLQVPASG TTRWNPSPEQ IKVLEMLYRG GMRTPNSFQI  120
EQITEELGKY GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTTTTSSSL PAAETKDGLG  180
KKEEASSEDA SSRKRRRCRT WGDVHGEDVT TTTTTTTEVV ADCTDDVTLE LFPLRPQGKA  240
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG381000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851951e-108BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds.
GenBankEU9642751e-108EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823101.11e-118WUSCHEL-related homeobox 4-like isoform X2
SwissprotQ25AM28e-92WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV38e-92WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A3L6Q5Y11e-121A0A3L6Q5Y1_PANMI; WUSCHEL-related homeobox 4
STRINGPavir.J15457.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.15e-34WUSCHEL related homeobox 4