PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG385600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 373aa MW: 41477.2 Da PI: 7.1888

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG385600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.3e-11	84	121	6	43
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + rr+++NReAAr+sR+RKka+i++Le+ +L + + Pavir.7NG385600.2.p 84 VLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 121 679************************86555554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-9	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	81	125	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.9E-8	83	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.0E-8	85	128	No hit	No description
SuperFamily	SSF57959	6.68E-7	85	127	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.4E-29	169	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MTSASAVQFA AAPIRMGVYE RPAPAPVMGM WSSDPFKVDS GQATSGSTVM EADKFDTGLE 60 DVPQVALERA RSTDQETSRP PERVLRRLAQ NREAARKSRL RKKAYIQQLE TSRMKLAQLE 120 QELQRARQQG AYANGNLGDP NLGFAGTMDP GVAAFEIDYS NWVEEQNRHT AELRSALQGQ 180 TTELELRMLV ETGLNNYEHL FRIKALAANS DVFYVTSGMW KTPAERFFLW IGGFRPSEVL 240 KILRPQLEPL TEAQLMAVGG LQHTLTQAED ALSQGMEKLQ QNLAETLTAA ADPFGPPDGY 300 MMQMAPAVEK LKELVGFVTQ ADHLRQTTLQ QMHKILTTRQ AARGLLALGD YFQRLRALSH 360 LWATRPRESA IS*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MTSASAVQFA AAPIRMGVYE RPAPAPVMGM WSSDPFKVDS GQATSGSTVM EADKFDTGLE  60
DVPQVALERA RSTDQETSRP PERVLRRLAQ NREAARKSRL RKKAYIQQLE TSRMKLAQLE  120
QELQRARQQG AYANGNLGDP NLGFAGTMDP GVAAFEIDYS NWVEEQNRHT AELRSALQGQ  180
TTELELRMLV ETGLNNYEHL FRIKALAANS DVFYVTSGMW KTPAERFFLW IGGFRPSEVL  240
KILRPQLEPL TEAQLMAVGG LQHTLTQAED ALSQGMEKLQ QNLAETLTAA ADPFGPPDGY  300
MMQMAPAVEK LKELVGFVTQ ADHLRQTTLQ QMHKILTTRQ AARGLLALGD YFQRLRALSH  360
LWATRPRESA IS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3176	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG385600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823704.1	0.0	transcription factor TGAL6-like isoform X2
Refseq	XP_025823705.1	0.0	transcription factor TGAL6-like isoform X2
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A2T7D0L7	0.0	A0A2T7D0L7_9POAL; Uncharacterized protein
STRING	Pavir.Gb00388.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-127	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Pavir.7NG385600.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]