PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG399000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 188aa    MW: 21441.3 Da    PI: 9.7442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG399000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.3e-182369455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Pavir.7NG399000.1.p 23 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 69
                         59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-201676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-182273No hitNo description
SuperFamilySSF474592.22E-212295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-152469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEDGGVPRRS TPPTTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCT KTDKVSMLDE  60
AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ QYMHYITADP AQMPPLRPSG QQPRPFQITQ  120
ANSHRQSNVE SDFLSQMQNL HPSEPPQNFL RPPKLQLYTP EQRGGLASTS HNGGWIPERS  180
SSYNFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.317750.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG399000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826117.11e-133transcription factor PIF1-like
RefseqXP_025826118.11e-133transcription factor PIF1-like
TrEMBLA0A2S3IAI41e-132A0A2S3IAI4_9POAL; Uncharacterized protein
TrEMBLA0A2T7D0231e-132A0A2T7D023_9POAL; Uncharacterized protein
TrEMBLA0A3L6PTD71e-132A0A3L6PTD7_PANMI; Uncharacterized protein
STRINGPavir.Gb00491.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-28phytochrome interacting factor 3-like 5