PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG402400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28207.3 Da    PI: 9.1272
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG402400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.5e-26959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien +nrqvtfskRr g+lKKA+EL +LCda++ viifs +g++yeyss
  Pavir.7NG402400.2.p  9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIIFSGSGRMYEYSS 59
                         68***********************************************96 PP
2K-box58.82.4e-20851621491
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                          +++  qe++++k+e + L+    h +GedL s s+++L +Leqq+e sl k+R +K+ell +q+ e++++e  ++ee+
  Pavir.7NG402400.2.p  85 QQKIIQEMTRMKDERNRLRIIMGHCMGEDLASFSVEDLSNLEQQMEFSLYKVRLRKQELLDQQLLEMRHREMHMSEEQ 162
                          68899********************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-30279IPR002100Transcription factor, MADS-box
CDDcd002657.44E-39276No hitNo description
PRINTSPR004045.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1781163IPR002487Transcription factor, K-box
PROSITE profilePS5129712.35785183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLLK KANELAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIANIFDR YLKAPSTRFE EMDIQQKIIQ EMTRMKDERN RLRIIMGHCM GEDLASFSVE  120
DLSNLEQQME FSLYKVRLRK QELLDQQLLE MRHREMHMSE EQSGYLCLMD PAARGQSQAA  180
EMAANPRPFP WWDVGASASA SGSQRPHGRD AEPSVTALQL SPRLHGYRLQ PRQPNLQDAS  240
LHGWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-17160160MEF2 CHIMERA
6byy_B4e-17160160MEF2 CHIMERA
6byy_C4e-17160160MEF2 CHIMERA
6byy_D4e-17160160MEF2 CHIMERA
6bz1_A4e-17160160MEF2 CHIMERA
6bz1_B4e-17160160MEF2 CHIMERA
6bz1_C4e-17160160MEF2 CHIMERA
6bz1_D4e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG402400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385321e-180BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691331e-180BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
GenBankHQ8587371e-180HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822905.11e-164MADS-box transcription factor 31-like isoform X2
SwissprotQ84NC24e-89MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A2T8IDS81e-162A0A2T8IDS8_9POAL; Uncharacterized protein
STRINGPavir.Gb00526.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]