PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG406700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 207aa    MW: 21321.2 Da    PI: 8.2367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG406700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-202171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrdp+    r +r++lg+f+tae Aa+a++aa++ ++g
  Pavir.7NG406700.1.p 21 PRFRGVRKRP-WGRYAAEIRDPT----RkARVWLGTFDTAEAAARAYDAAALHFRG 71
                         689*******.**********84....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-132171IPR001471AP2/ERF domain
CDDcd000181.11E-192181No hitNo description
SMARTSM003802.0E-362285IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-222280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-322279IPR001471AP2/ERF domain
PROSITE profilePS5103224.5532279IPR001471AP2/ERF domain
PRINTSPR003671.4E-102334IPR001471AP2/ERF domain
PRINTSPR003671.4E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPKNSALPP SSAATDGMME PRFRGVRKRP WGRYAAEIRD PTRKARVWLG TFDTAEAAAR  60
AYDAAALHFR GPKAKTNFPV AFAADAHPPP PKMLAVSPSS STVESSSRDS PAASPAAAPA  120
PSLDLSLGIP PMVAAQPFLF LDPRLAVTVA VPAPVPCRPA VVAGASKATC REDEHSDTGS  180
SSSVVDASPA VDVGFDLNMP PPAEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201782975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1090.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG406700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857092e-89BT085709.1 Zea mays full-length cDNA clone ZM_BFc0050D08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.11e-106ethylene-responsive transcription factor 4-like
TrEMBLA0A2T8IDR91e-103A0A2T8IDR9_9POAL; Uncharacterized protein
STRINGPavir.Gb00545.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.19e-23ethylene response factor 7