PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG422000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 204aa MW: 23374.2 Da PI: 4.9849

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG422000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.3	1.4e-14	96	176	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n+Y++ GF v+k k++k +k t+vC++ k++++ + +++r++ r gCk +++v +gkw++t +++ HnH l+ Pavir.7NG422000.1.p 96 FVNAYGQLSGFAVVKGKNYKD------KKITLVCNRFRKPSDTANP-TRKRKRYGIPRSGCKMRVTVCII-NGKWQMTAVDNRHNHRLV 176 779***************9......4678*******9998.99999999***99999999.*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-12	96	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDDEDKMEDS TAGPIESRQI GKEIVSMLEK DIEIYGSQPG PETEENKGEP AEEENEDDVV 60 ECEEEEYFFP TPDEVEIAKA PEEGMTFNSI DEAQHFVNAY GQLSGFAVVK GKNYKDKKIT 120 LVCNRFRKPS DTANPTRKRK RYGIPRSGCK MRVTVCIING KWQMTAVDNR HNHRLVCSEE 180 LTKNFLKHRH MSEHEKNFSR ILQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG422000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684165.1	4e-52	protein FAR1-RELATED SEQUENCE 5
TrEMBL	K3Y5L3	7e-51	K3Y5L3_SETIT; Uncharacterized protein
STRING	Pavir.Gb02294.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-08	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Pavir.7NG422000.1.p