PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG431600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 193aa    MW: 20094.7 Da    PI: 10.5157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG431600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-191363155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr ++ +gr++AeIrdp +   r+r++lg+f++ae Aa+a++ a++ l+g
  Pavir.7NG431600.1.p 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDSAEAAARAYDVAARTLRG 63
                         68********.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-131363IPR001471AP2/ERF domain
CDDcd000183.61E-201371No hitNo description
SuperFamilySSF541715.04E-221472IPR016177DNA-binding domain
SMARTSM003807.4E-361477IPR001471AP2/ERF domain
PROSITE profilePS5103223.9991471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-311471IPR001471AP2/ERF domain
PRINTSPR003671.7E-101526IPR001471AP2/ERF domain
PRINTSPR003671.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMRDTAAVAV AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTFDSAEAA ARAYDVAART  60
LRGPLARTNF PCASSRLPLP SRHQGGCGGG LVAPPPAAPT CSSSSTVESS SGPRGAPRAA  120
AAAAPRIRRR SVKKPRPAAP DTDCHSDCAS SASVVDDGDD ASTVRSRAPF DLNVPAPVDG  180
DHALDLCTEL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20771772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG431600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580143e-94EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822790.13e-73ethylene-responsive transcription factor 7-like
SwissprotQ9LDE49e-30ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A3L6Q6G33e-85A0A3L6Q6G3_PANMI; Ethylene-responsive transcription factor 7-like
STRINGPavir.Gb00092.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.19e-24ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]