PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG438900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 430aa    MW: 46842.5 Da    PI: 7.258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG438900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-15297392395
                          EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++v++  
  Pavir.7NG438900.1.p 297 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPTVWKFKYRYwpNNKSRMYILE-TTGEFVKRHGLQAKDILVIY-- 381
                          789******************999886432..34556777775555*********888888888888.9*******************.. PP

                          SS.SEE..EEE CS
                   B3  86 gr.sefelvvk 95 
                          ++ +++++v +
  Pavir.7NG438900.1.p 382 KNkKSGRYVAR 392
                          44477766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-17293391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-24294404IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-8295397IPR003340B3 DNA binding domain
PfamPF023626.0E-12297391IPR003340B3 DNA binding domain
CDDcd100173.06E-18299390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MANAKGSSAA GAGAGHGDLG RGISHEQYQA FVASVHRTAP GAANVHHHQY PAGLIQAPPM  60
AMPVHAPVPR PSYSPQIAVP PPHPFARPQE PHRAQPTGRY QDYSPYGNTA SSQYTRGFAD  120
WGTHNNALMS LAHATTFGSG SGSINSNGFH QNFCSYNTHT WTTTYMPRDP CNTAYGPATM  180
NMMLQTPSFH NNYEKDSGAG FAASSFTMPA TAVPTSPFQL MSPKSTNYTS TQVFEEPNNL  240
EDTSTVFGSG DIESENSEEP DPTPVAEIED LKQGKGHVIN VMSTTINCQD YRIILRKDLT  300
NSDVGNIGRI VLPKKDAEPN LPILEDKDGL ILEMDDFELP TVWKFKYRYW PNNKSRMYIL  360
ETTGEFVKRH GLQAKDILVI YKNKKSGRYV ARAVKAGDIQ VPQCECIKAG NLSEGCGFAV  420
SPSAKKIII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-342843972115B3 domain-containing transcription factor LEC2
6j9c_D1e-342843972115B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG438900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLA0A2T7D1Q00.0A0A2T7D1Q0_9POAL; Uncharacterized protein
STRINGPavir.Gb00057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-36B3 family protein