PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG447800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 131aa MW: 15647.7 Da PI: 8.8179

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG447800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.5	1.3e-24	22	113	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fYn+YAk GFsvr+++ + ++e t r+fvCs+eg+r+e++ k ++k+r++r+ tr gC a+l++ +++ +g+w+v+++ eHnH+ Pavir.7NG447800.1.p 22 QFYNNYAKGKGFSVRRDYCEWDIGHNERTLRHFVCSCEGFRKEKELKrENKKRKPRNITRFGCPARLVIARDQnTGQWHVKDFICEHNHP 111 6*******************999999*********9998775789999*************999*************9 PP FAR1 89 la 90 ++ Pavir.7NG447800.1.p 112 MV 113 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-23	22	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MPGLEYNLVI SKVFDDEEQG YQFYNNYAKG KGFSVRRDYC EWDIGHNERT LRHFVCSCEG 60 FRKEKELKRE NKKRKPRNIT RFGCPARLVI ARDQNTGQWH VKDFICEHNH PMVEQDLACL 120 LRSHRRIRDE *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	73	RKEKELKRENKKR
2	61	75	RKEKELKRENKKRKP
3	66	74	LKRENKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG447800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466896.2	9e-63	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3RQA3	1e-44	A0A0Q3RQA3_BRADI; Uncharacterized protein
TrEMBL	A0A453HKV6	1e-44	A0A453HKV6_AEGTS; Uncharacterized protein
STRING	Pavir.Ib02466.1.p	3e-80	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7NG447800.1.p