PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG022700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 157aa    MW: 17092 Da    PI: 8.4807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG022700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.7e-113422459
                         EEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY 24 YYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                         YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Pavir.8KG022700.2.p  3 YYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNQHTCS 42
                         ******99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.6E-8143IPR003657WRKY domain
SuperFamilySSF1182901.26E-9243IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-10342IPR003657WRKY domain
PfamPF031061.5E-12341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MFYYRCTYKN DMKCPATKQV QQKDTSDPPL FSVTYFNQHT CSTSSNPMGS TRDIAAPSSS  60
RKAVSICFSP HTANEQPTFL TTSATHSFRA NQQPERSPYA SQFQWTTSSS PTGNGPVTIE  120
VDSILGGSIS SSSGGALPRT LLPIGQSRCI EYFHFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93260.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG022700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586291e-102KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.18e-84probable WRKY transcription factor 46 isoform X1
TrEMBLA0A2T7E4I64e-85A0A2T7E4I6_9POAL; Uncharacterized protein
STRINGPavir.J14888.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-10WRKY family protein