PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG025200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 295aa    MW: 32146.7 Da    PI: 5.0103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG025200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.82.1e-19101371126
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk.s 80 
                          +pp++rF Pt  el+ +yL++ v++        e e v+  +d+y+++P +L +   ++ +++ +wyf + ++ k  + g+r +ra++  
  Pavir.8KG025200.1.p  10 VPPCYRFTPTARELIRYYLNPWVANPGqtppfGEPEGVVCAADVYSADPGTLTSrlrRFGHDDGNWYFLCVARWKDGNaGTRMSRAVRgG 99 
                          599*******************99877666642233579999**********853445666777******9999988769*****66648 PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                          g+W+ +gk  +v +      g ++t+ +    +  g k+ W+m+e+
  Pavir.8KG025200.1.p 100 GTWHGSGKRVAVPR-----HGYRQTFEYR---DAAGDKSAWLMEEF 137
                          99**9999888777.....79*****995...78899********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-234156IPR003441NAC domain
PROSITE profilePS5100523.05310159IPR003441NAC domain
PfamPF023654.3E-1511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEQQARWPDV PPCYRFTPTA RELIRYYLNP WVANPGQTPP FGEPEGVVCA ADVYSADPGT  60
LTSRLRRFGH DDGNWYFLCV ARWKDGNAGT RMSRAVRGGG TWHGSGKRVA VPRHGYRQTF  120
EYRDAAGDKS AWLMEEFGSS MPEATDGEGV RVICRVPPSK RQRATLSQEH GFAAADYWAA  180
AALAPPDAGC SYAIASTSQT AAPVNGAAST TTWQLQPMME QGVGYYHPTA GINGDEDIKG  240
VPEAEPLETV PADIGWQQFA EMGYGFGYAA EDARMNEWMR NTFSSCPQLI DAGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG025200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.11e-174NAC domain-containing protein 30-like
TrEMBLA0A3L6Q4N40.0A0A3L6Q4N4_PANMI; Uncharacterized protein
STRINGPavir.Hb01963.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-13NAC domain containing protein 96