PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG035100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 499aa    MW: 54316.9 Da    PI: 8.0841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.91e-107474872374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          + lL++cA  v++g l +a++ L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +   + aa++ ++++ P+
  Pavir.8KG035100.1.p  47 IGLLYQCAAEVAAGALDRANHSLEQITQLASLDApHTLQRLAAVFADALARKLLSLVPGLSRALLSTANSG-EAHLVPAARRHLFDMVPF 135
                          679*******************************99***************************98888774.45555578899******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          +k+++lt+N+aIlea+ege+ vH++D++  +s+++QW+aL++aL +R++gpp+lRiT+v++     ke l +++  La+ Ae+l++pf+f
  Pavir.8KG035100.1.p 136 MKLAYLTTNHAILEAMEGEKFVHVVDLSgpASNPVQWVALFHALRARRGGPPQLRITAVHD----GKEFLANMAGALARDAEALDIPFQF 221
                          ***************************87789*****************************....9************************ PP

                 GRAS 179 nvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.................................................. 214
                          ++ v+ rledl++++L    rv++gEala+++v qlhrll                                                  
  Pavir.8KG035100.1.p 222 SA-VEARLEDLDPDALrqllRVRSGEALAISVVSQLHRLLaaddaagrsrlhvpgsscltpvqimarsspssfgellerelntrlqlspd 310
                          **.799*****9988766668999****************************************************************** PP

                 GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErell 290
                                    ++s + + +  ++L++v+ lsPk++vv+e ea+hn++ Flerf eal+yy++lfd+le  ++++      er+ vEr +l
  Pavir.8KG035100.1.p 311 spsvvsslspQSSPAAAAKLGRFLQAVRALSPKIMVVAEPEANHNAAAFLERFEEALNYYASLFDCLERAAAAQRqrwaAERARVERLVL 400
                          *********97777777779***********************************************7766555557889********** PP

                 GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                          g+e++ vva egaer+erhe+l++W +r+e+aG++ v +s   +++a+ ll+  ++ g y+v ++   ++++++W++rpL+svSaWr
  Pavir.8KG035100.1.p 401 GEEVRGVVAREGAERKERHERLAQWARRMEAAGMERVGMSFAGMMEARKLLQSLGWGGsYEVVHDarGQAFFFCWHRRPLYSVSAWR 487
                          *******************************************************55559998554266677**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.09720464IPR005202Transcription factor GRAS
PfamPF035143.6E-10547487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDIFPEDMVS SATSSPASSL YSPSPSPHGY GSWVQELSHD QQGVRLIGLL YQCAAEVAAG  60
ALDRANHSLE QITQLASLDA PHTLQRLAAV FADALARKLL SLVPGLSRAL LSTANSGEAH  120
LVPAARRHLF DMVPFMKLAY LTTNHAILEA MEGEKFVHVV DLSGPASNPV QWVALFHALR  180
ARRGGPPQLR ITAVHDGKEF LANMAGALAR DAEALDIPFQ FSAVEARLED LDPDALRQLL  240
RVRSGEALAI SVVSQLHRLL AADDAAGRSR LHVPGSSCLT PVQIMARSSP SSFGELLERE  300
LNTRLQLSPD SPSVVSSLSP QSSPAAAAKL GRFLQAVRAL SPKIMVVAEP EANHNAAAFL  360
ERFEEALNYY ASLFDCLERA AAAQRQRWAA ERARVERLVL GEEVRGVVAR EGAERKERHE  420
RLAQWARRME AAGMERVGMS FAGMMEARKL LQSLGWGGSY EVVHDARGQA FFFCWHRRPL  480
YSVSAWRPAA GRHRLGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-31344887380Protein SCARECROW
5b3h_A4e-31344886379Protein SCARECROW
5b3h_D4e-31344886379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLA0A3L6RCH90.0A0A3L6RCH9_PANMI; Scarecrow-like protein 3
STRINGPavir.Hb01986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-97scarecrow-like 3