PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG045500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 317aa    MW: 35530.4 Da    PI: 7.1825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG045500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.27.5e-2984174187
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++ k+++L++gD+v F++++
  Pavir.8KG045500.1.p  84 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYIKEKQLDAGDVVHFERMR 173
                          99***************************9666668889************************************************764 PP

                          S CS
                   B3  87 r 87 
                           
  Pavir.8KG045500.1.p 174 G 174
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-3979196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-2881175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-2683174No hitNo description
PROSITE profilePS5086313.53584189IPR003340B3 DNA binding domain
PfamPF023623.7E-2684174IPR003340B3 DNA binding domain
SMARTSM010194.8E-2184189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPDQETCMVL YATHHHCYSS LPASFRCRQE PNTHLFAPQT LSSPPASRTA MNHLSQEHPQ  60
AWPWGVAMNT NLHYQHYYEK EYLFEKPLTP SDVGKLNRLV IPKQHAERYF PLSGDSGEKG  120
LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYIKEKQ LDAGDVVHFE RMRGFGMADR  180
LFISYRRRGE SATGAAASPP AVCVAAPAQS AGGEQQPWSP MCYSTSGSYP TSPANSHAYR  240
HSVDNDHSNM QHAGESQCDR YSRSCSAASA APPRRLRLFG VNLDCGPEPD PEPETPTTIY  300
SYMDQSPYAP NTWGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50791883113B3 domain-containing transcription factor NGA1
5os9_B1e-50791883113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.121000.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG045500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827830.11e-174B3 domain-containing protein Os11g0156000-like isoform X2
SwissprotQ53QI01e-120Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A2T7CKD21e-174A0A2T7CKD2_9POAL; Uncharacterized protein
STRINGPavir.Hb01814.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.24e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]