PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG046200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 419aa    MW: 44156.6 Da    PI: 9.7133
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG046200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-1078140163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke kr rr  +NRe+Ar   +R++   +eL++kv+ L+++N+ +kke ++ ++e+ +lk  +
  Pavir.8KG046200.1.p  78 EKEAKRLRRVLSNRESARQTILRRQSIRDELTRKVADLSSQNENMKKEKDMVTQEYLSLKEAN 140
                          89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.2E-677143No hitNo description
PfamPF001702.6E-878141IPR004827Basic-leucine zipper domain
SMARTSM003385.7E-1278142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.18580143IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.05E-782138No hitNo description
CDDcd147028.55E-1383133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSDDSDGQRP CRRGVTGDVE LDAAMALADM AGAESQQPRP GAPAPHRPAA AAHQAAAAED  60
EEEKLASTRL SLELGKAEKE AKRLRRVLSN RESARQTILR RQSIRDELTR KVADLSSQNE  120
NMKKEKDMVT QEYLSLKEAN KQLKEQARHH HRRPVVCSGV PPLVGSAARS ERQRPRMGGK  180
ESCRTQLRAA ASCRLARFGC PRVATSAGLV SLSPEFSPSV ARTTKKAPAA AAAVPIQQAA  240
AGEAMAAPAA ASPPATPPRP GFLYAAAPPA VPYVWGSWPP GPGYEHHHHG GSPPPICLPP  300
RAWYYPVVAD PRGSPTSAYP PPPQQQQAQA AAFQPAEPAG SGGGATAEED TDDDPCSLTL  360
GLDAADRRSA PISIDARGGA GPSGRDKAAT AAEARKRRKE LTKLKHMHAA GRPGGEPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG046200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9585021e-83EU958502.1 Zea mays clone 1697405 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828038.14e-70uncharacterized protein LOC112903047
TrEMBLA0A0D9XP699e-79A0A0D9XP69_9ORYZ; Uncharacterized protein
STRINGPavir.Hb01810.1.p4e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.18e-15bZIP family protein