PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG054000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 284aa    MW: 29118.1 Da    PI: 6.1465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG054000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-2094143255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a++ ++g
  Pavir.8KG054000.1.p  94 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALGFRG 143
                          7********.**********7.....337**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-2294153IPR016177DNA-binding domain
PROSITE profilePS5103225.29194151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3394153IPR001471AP2/ERF domain
PfamPF008471.4E-1394143IPR001471AP2/ERF domain
SMARTSM003801.6E-3694157IPR001471AP2/ERF domain
PRINTSPR003675.9E-1295106IPR001471AP2/ERF domain
CDDcd000181.46E-13102153No hitNo description
PRINTSPR003675.9E-12117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLSGYERSQE ASVMVEALAR VVAGGEPRRE GVAVAPAAGG WQGYGEMAPP PHEYGRAATP  60
AQHSPAASAS AGPNGEIPSP SSAESSGGGG PRRRYRGVRQ RPWGKWAAEI RDPHKAARVW  120
LGTFDTAEAA ARAYDEAALG FRGSRAKLNF PESAALRPPS APQAAAAAPP PPPPPPQRPE  180
ALLESQALAG GGEEEYSEYA RFLQGSGEPP RFLEQTVAAP AAAPGSPSFP VLLSFGASGS  240
DGAASHQWWP EGNRSGGDGV APPPATWAGS GWWPAPPRDP SAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2293151463ATERF1
3gcc_A8e-2293151463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.189154e-64stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG054000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032864e-73AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149574e-73AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-73CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827506.11e-107ethylene-responsive transcription factor ERF110-like
TrEMBLA0A3L6PN491e-109A0A3L6PN49_PANMI; Uncharacterized protein
STRINGPavir.Hb01784.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-15related to AP2 6