PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG057900.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 330aa MW: 34384.4 Da PI: 9.9961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG057900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.2	4.4e-25	107	183	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++w+fF++r++++ +g r+ r+t sgyWkatg+ v+s+ +++++g k+t+vfy+grap+g+kt+W m+ey++ Pavir.8KG057900.3.p 107 DKEQWFFFCPRAERELNGGRPARTTPSGYWKATGSPSYVYSAppTSRAIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 183 5669***********************************9999999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.43	39	209	IPR003441	NAC domain
Pfam	PF02365	1.8E-10	96	182	IPR003441	NAC domain
SuperFamily	SSF101941	1.07E-27	105	209	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MASVASSKLL SNLLLHRQGV CGERERWKVV IVVAAMITIR CSRRGTGSTR RRRSCWASTS 60 ATASPAPGPR SSTSSPSSTS TATTPPSSGH VAWCARAAMA GAANVGDKEQ WFFFCPRAER 120 ELNGGRPART TPSGYWKATG SPSYVYSAPP TSRAIGEKRT MVFYQGRAPT GTKTRWKMNE 180 YKAVAADDAP PGAAVRLRNE FSVCRVYTSN GTLRSFDRRP LNPPAAGVDD QTAAAHRCQE 240 QEAPPPPPAA AGSQMAAVDV VVAAANGGQS SDEHSHGGSS SSGSLGAVVD GAGAAAAAAA 300 IDWDSLIPPV DYLRFGGADA LSHVVWPPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	98	210	61	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	98	210	61	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	98	210	61	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	98	210	61	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	98	210	64	169	NAC domain-containing protein 19
3swm_B	2e-17	98	210	64	169	NAC domain-containing protein 19
3swm_C	2e-17	98	210	64	169	NAC domain-containing protein 19
3swm_D	2e-17	98	210	64	169	NAC domain-containing protein 19
3swp_A	2e-17	98	210	64	169	NAC domain-containing protein 19
3swp_B	2e-17	98	210	64	169	NAC domain-containing protein 19
3swp_C	2e-17	98	210	64	169	NAC domain-containing protein 19
3swp_D	2e-17	98	210	64	169	NAC domain-containing protein 19
4dul_A	2e-17	98	210	61	166	NAC domain-containing protein 19
4dul_B	2e-17	98	210	61	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG057900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828030.1	3e-91	NAC domain-containing protein 90-like isoform X3
TrEMBL	A0A3L6Q3I6	1e-92	A0A3L6Q3I6_PANMI; NAC domain-containing protein 90-like
STRING	Pavir.Hb01808.1.p	1e-167	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-43	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Pavir.8KG057900.3.p