PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG081000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 260aa    MW: 27982.8 Da    PI: 5.1271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG081000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.2e-13111392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk. 84 
                          p+  +F+Pt+ ++v +yL +++ g +++  +++ ++d +++ Pw+L +++ +  ++  fF + +++    kr  ra+        g+W  
  Pavir.8KG081000.1.p  11 PAANKFDPTEADIVARYLLPRAVGFPNPHGHAVIDADPCSCPPWELMRRHGHAGSDHAFFGRPRSQ--DRKRIVRAVGpgedgvGGTWDg 98 
                          77789*********************99988899************85554444555555555443..3468888744445555899*75 PP

                  NAM  85 .atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++g ++ vls+ g        L     + +k + + Wvmh+yr+
  Pavir.8KG081000.1.p  99 qKSGATRLVLSRAG-GGAAAPRLEV---TPQKIRTSGWVMHDYRI 139
                          57888999999543.3344445554...467777899******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-216156IPR003441NAC domain
PROSITE profilePS5100518.87610156IPR003441NAC domain
PfamPF023652.0E-713139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEAYRFGFDL PAANKFDPTE ADIVARYLLP RAVGFPNPHG HAVIDADPCS CPPWELMRRH  60
GHAGSDHAFF GRPRSQDRKR IVRAVGPGED GVGGTWDGQK SGATRLVLSR AGGGAAAPRL  120
EVTPQKIRTS GWVMHDYRIV DPPHLADTVL YRVRITDRRK KEQGKQQQQA DADAVAGHQV  180
VIPPGPDQPG PSNYCEVEEH GGAVGDTGGY YADDDGSQYL NQDLSCYMLY DGDGSGDGDY  240
LFNVGDDNSF QCPDGGNGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG081000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827521.11e-123NAC domain-containing protein 67-like
TrEMBLA0A2T7CKQ61e-128A0A2T7CKQ6_9POAL; Uncharacterized protein
TrEMBLA0A3L6Q2D91e-130A0A3L6Q2D9_PANMI; Uncharacterized protein
STRINGPavir.J02970.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-08NAC domain containing protein 41