PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG089200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 405aa    MW: 44279.3 Da    PI: 10.658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG089200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-18104192197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk++ p+ +++  rl +p +f ++ ++++++   ++l+ +sg++W+  l  +  s++  +++GWkeFv ++ +k+g f+vF++dg s+f
  Pavir.8KG089200.1.p 104 FFKIFFPNQSGE--RLKIPASFHQHLKEQPTG--LVSLKGPSGNTWQAVL--TSDSEGLCFGQGWKEFVTDHSVKQGHFLVFTYDGLSKF 187
                          788887766665..69******9666777766..7***************..********************************998998 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                             v+vf
  Pavir.8KG089200.1.p 188 --SVTVF 192
                          ..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2297193IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76102195IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-19102193IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-16104191IPR003340B3 DNA binding domain
CDDcd100174.75E-18104192No hitNo description
SMARTSM010193.1E-15104195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVAGRKKQQG SSGAAATPEK ESGKGKGKAA RDDGKEPAKE KAVAGARKKA AKGKEPAKEK  60
QRQKGKQQKE AREGGKKETA KAKAKQQQEK QAAAAAAKSA GQQFFKIFFP NQSGERLKIP  120
ASFHQHLKEQ PTGLVSLKGP SGNTWQAVLT SDSEGLCFGQ GWKEFVTDHS VKQGHFLVFT  180
YDGLSKFSVT VFGSLGVVDP PALVAKPTND VVIKIEDDEE VQGDMDAGGT SDTSILPPKE  240
GNGITRKRTR GVNNHSEGGN ASKRHSSVAK NSEKKRPDAI PRTSKDRRTS KDASTIDNTE  300
KGTPYSLLDE SMAFNKTQVR EKNMPKLGKF IVRRARQPVV ISQRRPVTQE EKDLALKRAK  360
EFKSENPFAV QTMMESYVYV GFFMVMSLIS HMVFHLYRAQ KSSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70340.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG089200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.10.0B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.10.0B3 domain-containing protein Os11g0197600-like
SwissprotQ2R9D21e-69Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A2S3ID180.0A0A2S3ID18_9POAL; Uncharacterized protein
STRINGPavir.J06349.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.16e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]