PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG114000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 582aa MW: 67507.3 Da PI: 7.3694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG114000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.7e-17	4	73	24	91
FAR1 24 rngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +++e t r++vCs++g+ree+ k + k+rr+r tr+gC akl++ +++ +g+w+v+++ eHnH+lap Pavir.8KG114000.1.p 4 DHTELTLRRYVCSRQGYREEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnSGQWYVKNFIDEHNHPLAP 73 4677999*********9997663679999*************999**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-16	5	73	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-33	182	278	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	422	456	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0068	431	458	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
WNSDHTELTL RRYVCSRQGY REEKYVKKEI KKRRPRDITR VGCPAKLVIA LDRNSGQWYV 60 KNFIDEHNHP LAPADLGCLL RSHRSISDAQ KAEIIFEIME MQYGGYDKVG YTLRDLYNFC 120 HLYKQEIIAG GDAQTIISHL MERQNKDSDL FFKYMTDGEG HLQGLFWCDT QYLLDYEAFG 180 DVVVFDSTYK INRYNLPLVP FVGVNHHYRT VIFGCGIISH ENIESYVWLL KMKTFTEANV 240 QKHPISVITD GDLAMQRAIS VVWPNSPHRL CGWHIEQNLV RNVHDNIVKA EFRIFMYDLC 300 SIEEIERKWQ AFFEKYDVTE DSWLYQMYEV RATWCAAYHA GNCYLGLRSN QRSESMNSRL 360 QMKLDGKMTL LEMVQCYESY LTKVRRIEAD DDANALQFEP FTDPDASILE VNTKKRFTPN 420 VFKTKANLKE VSCSCRKLQS LGTPCSHIFF VLGIRDESML PDCCVLVRWT MGAKRAFPPI 480 RKSTMYDYSP TLLRYRELHN LSLTASFTAS RSTEGYERIK HVLEQEAAVI MPNAGANEGN 540 MYGPVLPQAP EVDCEEFRDV LDPMHVPSRG APKKKVEVKF R*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

WNSDHTELTL RRYVCSRQGY REEKYVKKEI KKRRPRDITR VGCPAKLVIA LDRNSGQWYV  60
KNFIDEHNHP LAPADLGCLL RSHRSISDAQ KAEIIFEIME MQYGGYDKVG YTLRDLYNFC  120
HLYKQEIIAG GDAQTIISHL MERQNKDSDL FFKYMTDGEG HLQGLFWCDT QYLLDYEAFG  180
DVVVFDSTYK INRYNLPLVP FVGVNHHYRT VIFGCGIISH ENIESYVWLL KMKTFTEANV  240
QKHPISVITD GDLAMQRAIS VVWPNSPHRL CGWHIEQNLV RNVHDNIVKA EFRIFMYDLC  300
SIEEIERKWQ AFFEKYDVTE DSWLYQMYEV RATWCAAYHA GNCYLGLRSN QRSESMNSRL  360
QMKLDGKMTL LEMVQCYESY LTKVRRIEAD DDANALQFEP FTDPDASILE VNTKKRFTPN  420
VFKTKANLKE VSCSCRKLQS LGTPCSHIFF VLGIRDESML PDCCVLVRWT MGAKRAFPPI  480
RKSTMYDYSP TLLRYRELHN LSLTASFTAS RSTEGYERIK HVLEQEAAVI MPNAGANEGN  540
MYGPVLPQAP EVDCEEFRDV LDPMHVPSRG APKKKVEVKF R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG114000.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441960.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1HMH8	0.0	I1HMH8_BRADI; Uncharacterized protein
STRING	Pavir.Hb01564.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-74	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8KG114000.1.p