PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG117600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 642aa    MW: 69192.8 Da    PI: 4.2266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.59.5e-18106275128
                  NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +t +gyWkatgkd+ ++  +g++vg kktLv+ + rap+ge+tdWvmhey+l
  Pavir.8KG117600.1.p  10 MSTTGDGYWKATGKDRFICG-GGRAVGNKKTLVYQHSRAPRGERTDWVMHEYTL 62 
                          55799**************9.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.44185IPR003441NAC domain
SuperFamilySSF1019414.71E-22985IPR003441NAC domain
PfamPF023657.8E-81262IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MSNAGLAQPM STTGDGYWKA TGKDRFICGG GRAVGNKKTL VYQHSRAPRG ERTDWVMHEY  60
TLLADALPPA AQGRESYALY KLFQKSGAGP KNGEQYGAPF REEDWLDDDE EGVTAAAPAS  120
SVLNSNNCPA TVEDHAIADR ELPIEDLDEL LSQIGNDKEE FGEAQLDFST PATSHGQSQG  180
WLSEGGDKAE VVDASISSGA GVAAENTCTG LPLGDIEQLL MQMSDDHQNA ELFSDLSTSV  240
PQLQLQCDDH QVWLDAHREQ EVCAPDPTTS SSVAVTAECT DTEFGDLEGL LLQISNDQGM  300
VEPQSDLSGP IPYHNFNQVG IGDFHESHGA PVGNLSCIVQ ESTFDPQTEA RSKFPQSNLT  360
NVPFSGETNS SEGTSVPRSV SGLISYNSQD ADEEFLEIND FFDLEGVEQS ANCTATEHLI  420
SATNGMFDDL EYSDAHTFLP GPFDTVGVVA ENEFFYFGNT GIQDQGYQYT TEVTTQNQAA  480
LNVRSHMKHT HVVLPSHASG TLNLHTANEP PNRSSTASQS WFNAALSALL DSVPSSPALA  540
AEIENTVINK TLQRISSFRS HQASGEENTV INITLHRISS FRSQQAASEQ PSTPRIQVTR  600
GGRLMFISLL VILAAVMWTF TAGSAGSALN FCKGLWKSSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-1479190174NAC domain-containing protein 19
3swm_B3e-1479190174NAC domain-containing protein 19
3swm_C3e-1479190174NAC domain-containing protein 19
3swm_D3e-1479190174NAC domain-containing protein 19
3swp_A3e-1479190174NAC domain-containing protein 19
3swp_B3e-1479190174NAC domain-containing protein 19
3swp_C3e-1479190174NAC domain-containing protein 19
3swp_D3e-1479190174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.125290.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.10.0NAC domain-containing protein 82-like
TrEMBLA0A2S3H1B90.0A0A2S3H1B9_9POAL; Uncharacterized protein
STRINGPavir.J03378.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-44NAC domain containing protein 17