PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG121100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 533aa    MW: 56264.8 Da    PI: 6.4147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.18.4e-533725311151
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaal 81 
                          lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALaarl+ s++  +++ +  +t++ +         s ++l+++
  Pavir.8KG121100.1.p 372 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALAARLSLSSNPSSSSSSGAATPRGTgvapytfppSPDTLKIY 461
                          68***************************************************996666666665555555556789999*99******* PP

                 GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspe 151
                          +++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+p+
  Pavir.8KG121100.1.p 462 QILYQACPYVKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGHPA 531
                          *******************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.528346533IPR005202Transcription factor GRAS
PfamPF035142.9E-50372531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGLLNCADTS SGAKLQQQHA PTSPTASVSE SNIVVSSTDP DANDALAGLQ ALKFDGDIDV  60
EIQSPDIAMW ESLFAEHMGA SGGDFLMFSP RRDFMATGSP RRDFLVSSPK RDYMVSSPKR  120
DYMMSSPKRD YMMSSPKREY MVTSPRRDSS PRRSTFSNLY SAGSHQQAYV HGVHGAEGGS  180
SGASQPLYGG LANHGKGKSQ SPLHKVYINN AHSNSGNKSN GPSSLSCSSS YGHGENLPLP  240
SMDPFLNDGG YLSGYQLPGK PGIQSGAASA TVTTVAPSSS QLPTLSECLA MPEPVYGGAE  300
EAVAAAAAGG LQMGGGLPAE LYYGGQFGVD GLTLQHQMAK NDQWAADSSL HSMLGSVIQT  360
EAEQEQDSGL QLVHLLLACA DFVSKGDQPS ALRHLHLLRR VASPLGDSMQ RVASYFADAL  420
AARLSLSSNP SSSSSSGAAT PRGTGVAPYT FPPSPDTLKI YQILYQACPY VKFAHFTANQ  480
AIFEAFHGED RVHVVDLDIL QGYQWPAFLQ ALAARPGGPP TLRLTGVGHP AAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-303595286166Protein SCARECROW
5b3h_A3e-3037952825165Protein SCARECROW
5b3h_D3e-3037952825165Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG121100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363771e-157AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377591e-157AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149671e-157AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828284.10.0DELLA protein RGL1-like
TrEMBLA0A2T8I9E30.0A0A2T8I9E3_9POAL; Uncharacterized protein
STRINGPavir.Ha00645.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-34GRAS family protein