PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG125100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 185aa MW: 20002.2 Da PI: 4.5192

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG125100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.4	8e-19	31	130	2	98
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw k ie++ +f+nh++P++ + i++ + mis+e+P +++k e+f+ elt+r+ + a++ r+++ sdi +a+++ + Pavir.8KG125100.1.p 31 LDEFWRKVvgeIENTVNFNNHTIPMSSVVEIIREHQGGLMISSETPPVVAKVLEIFVQELTVRASMCAKSHGRSSILGSDIYEAINSGES 120 67899876679****************************************************************************9 PP NF-YC 89 fdflvdivpr 98 + l ++ r Pavir.8KG125100.1.p 121 YVCLNNVLRR 130 9999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.35E-15	32	117	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.7E-14	46	115	IPR009072	Histone-fold
Pfam	PF00808	1.1E-6	53	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSSGSKGGAG RPQELHGSPP TPLPSLQQQE LDEFWRKVVG EIENTVNFNN HTIPMSSVVE 60 IIREHQGGLM ISSETPPVVA KVLEIFVQEL TVRASMCAKS HGRSSILGSD IYEAINSGES 120 YVCLNNVLRR AEPHFVATTS RLIEDGPTDH PYKSGEEATQ ISTEEPDEDL NLPTTSSGGT 180 EETK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG125100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	2e-45	uncharacterized protein LOC8071541
TrEMBL	A0A3L6Q0S2	1e-109	A0A3L6Q0S2_PANMI; Uncharacterized protein
STRING	Pavir.Hb01149.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17894	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-18	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pavir.8KG125100.1.p