PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG125800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 239aa    MW: 26394.5 Da    PI: 8.3978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG125800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.51.1e-17151197246
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk 46 
                           Dg++WrKYGqK+++g ++pr+YYrC+++  +C+++k +e++++++ 
  Pavir.8KG125800.1.p 151 YDGHQWRKYGQKNINGRQHPRNYYRCAYRerNCSATKTIEQQEQNNA 197
                          59**************************999**********998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-20136222IPR003657WRKY domain
SuperFamilySSF1182902.88E-17144222IPR003657WRKY domain
SMARTSM007741.2E-22150223IPR003657WRKY domain
PROSITE profilePS5081116.111152212IPR003657WRKY domain
PfamPF031061.3E-22152222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDRKSSLTLR PCCHGSESEM MLMMESMRSQ QELLMQLRAL VPPLLHGVHD TSADIAAQLF  60
DDVIGCNVSV ASKLEGCLIM STTGGDDDGP AVELVVDDKS KSSLARKRNS TITGDRTTDQ  120
EQAKPNNSAG QKRRRNDKQR SRALVTHVPH YDGHQWRKYG QKNINGRQHP RNYYRCAYRE  180
RNCSATKTIE QQEQNNAGTS SAIAGVENAK YTVVYYGDHT CKDHNISMHG PGTPAAAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG125800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805423.11e-119probable WRKY transcription factor 46
TrEMBLA0A2T8KGM41e-129A0A2T8KGM4_9POAL; Uncharacterized protein
STRINGPavir.Ca00084.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-14WRKY family protein