PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG127300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 258aa    MW: 28283.8 Da    PI: 8.2312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG127300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.89.2e-36171442128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          p+Gf+F+Ptdee++ +yL++++ + +l+  ++i ++d+++++Pw+L     ++++e yfFs+r  k + g++ nra+ +g Wk++gkd +
  Pavir.8KG127300.1.p  17 PAGFKFRPTDEEVILHYLRPRAVNAPLPS-SFIVDADVLSHNPWELL---PEGSTEKYFFSQRVLKWPIGNQWNRAAGDGHWKTSGKDVS 102
                          89************************999.89**************4...457789********************************** PP

                  NAM  92 vlsk.....kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                          ++++     +     +g kktLvfy+g++  ge+t+Wvm+ey+l
  Pavir.8KG127300.1.p 103 IFCRplnggE--PlmIGSKKTLVFYHGKSDFGENTEWVMQEYSL 144
                          ***9887444..255***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3913154IPR003441NAC domain
PROSITE profilePS5100539.81616207IPR003441NAC domain
PfamPF023658.8E-2117144IPR003441NAC domain
SuperFamilySSF1019412.75E-39195207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAFPQPAVSA ASIAHAPAGF KFRPTDEEVI LHYLRPRAVN APLPSSFIVD ADVLSHNPWE  60
LLPEGSTEKY FFSQRVLKWP IGNQWNRAAG DGHWKTSGKD VSIFCRPLNG GEPLMIGSKK  120
TLVFYHGKSD FGENTEWVMQ EYSLVGAGLT PYRVMRPGGS NHFGESSSAA AAITEKNGNQ  180
SGALNNAKVQ VLVNPDNSWV VCHIYKKKNH MPRVIAQVYN SAEGEQVPFY NFLEMGNSKE  240
ESSERTNVKA NSTGLGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-2791448140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG127300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828726.11e-112uncharacterized protein LOC112903717
TrEMBLA0A2T7CND41e-159A0A2T7CND4_9POAL; Uncharacterized protein
STRINGPavir.Hb01386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.18e-38NAC domain containing protein 47