PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG138700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 195aa    MW: 21258 Da    PI: 4.6058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-181968255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Pavir.8KG138700.1.p 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 68
                         69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-311976IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-221976IPR016177DNA-binding domain
CDDcd000182.73E-311976No hitNo description
PROSITE profilePS5103223.4721976IPR001471AP2/ERF domain
SMARTSM003805.2E-371982IPR001471AP2/ERF domain
PfamPF008477.7E-122068IPR001471AP2/ERF domain
PRINTSPR003672.8E-122031IPR001471AP2/ERF domain
PRINTSPR003672.8E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEVVVDNAAG MAAGDMAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAALRLRGRE ARLNFPGLVH HFRRPATAEP DDVRAAALEA AAQVRFRPDL LIMQPAAGDS  120
DSSCGSTGSP DLLLGDDVAW DVLLGTDELA PESPKMWTEL AEAMLMAPPV WEGNTADNDE  180
WAQGNLWDLP VWHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161976563ATERF1
3gcc_A1e-161976563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275111e-115KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.11e-117ethylene-responsive transcription factor ERF022
TrEMBLA0A3L6Q0971e-123A0A3L6Q097_PANMI; Uncharacterized protein
STRINGPavir.J22217.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-27ERF family protein