PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG141800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 197aa    MW: 22545.9 Da    PI: 9.6196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG141800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05123143222
                          EETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                           C+ C  +++r+s+L++H+r 
  Pavir.8KG141800.1.p 123 ICSLCQARCTRQSELENHLRG 143
                          7******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-84989No hitNo description
SMARTSM004515.7E-55488IPR003604Zinc finger, U1-type
SMARTSM003550.955781IPR015880Zinc finger, C2H2-like
PfamPF128741.7E-55781No hitNo description
PROSITE patternPS0002805981IPR007087Zinc finger, C2H2
SuperFamilySSF576676.06E-1099152No hitNo description
SMARTSM004510.021119153IPR003604Zinc finger, U1-type
SMARTSM003550.058122146IPR015880Zinc finger, C2H2-like
PfamPF128742.2E-8122146No hitNo description
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-6156193No hitNo description
SMARTSM004510.59162196IPR003604Zinc finger, U1-type
SMARTSM0035562165189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLFHLPGKR TSQGNLREHF AGQKHWSKVA SLVSKINAKS QKAKETAEKS GNALPMWVCR  60
FCQSSCTCQS DLENHMKGKR HQRNIRALME ECKNMENNYA SPKVKSDLNN VPRDEEGRAP  120
TWICSLCQAR CTRQSELENH LRGKRHRLNF LLLQVEEAKL YLSLNFCEVC NLQCNSEKML  180
AHYRTGKKHL AKLNGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG141800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801575.18e-59UBP1-associated proteins 1C-like
TrEMBLA0A3L6T4045e-61A0A3L6T404_PANMI; Uncharacterized protein
STRINGPavir.Hb01006.1.p1e-135(Panicum virgatum)