PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG149300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 203aa MW: 21842.1 Da PI: 4.4068

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG149300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.7	1.3e-18	31	128	2	96
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw k ie++ +f+nh++P++ + i++ + mis+e+P +++k e+f+ elt+r+ +ha++ +++ sdi +a+++ + Pavir.8KG149300.1.p 31 LDEFWRKVvgeIENTVNFNNHTIPMSSVVEIIREHQGGLMISSETPPVVAKVLEIFVQELTVRASMHAKSHGGSSILGSDIYEAINSGES 120 67899876679***************************************************************************99 PP NF-YC 89 fdflvdiv 96 + l ++ Pavir.8KG149300.1.p 121 YVCLNNVL 128 99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.2E-13	32	117	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.2E-13	46	115	IPR009072	Histone-fold
Pfam	PF00808	3.6E-6	53	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSSGSNGGAG RPQELHGSPP TPLPSLQEQE LDEFWRKVVG EIENTVNFNN HTIPMSSVVE 60 IIREHQGGLM ISSETPPVVA KVLEIFVQEL TVRASMHAKS HGGSSILGSD IYEAINSGES 120 YVCLNNVLRR AVTNHDQASM SSNAPQLQQE PHFVAATSRL MEDGPTDHLY KSGEEATQIS 180 AEESDEDLNL LTTSSGGTEE TK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG149300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	5e-53	uncharacterized protein LOC8071541
TrEMBL	A0A2S3IDE3	1e-118	A0A2S3IDE3_9POAL; Uncharacterized protein
STRING	Pavir.Hb01099.1.p	1e-147	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17894	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-18	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pavir.8KG149300.1.p