PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG154400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 22976.8 Da    PI: 9.9368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG154400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.6e-164594355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr ++ +g++ AeIrd s++g  +r++lg+f+t+e Aa a+++a+ + +g
  Pavir.8KG154400.1.p 45 FIGVRKRP-WGKFGAEIRD-STRG-GARVWLGTFDTPEAAALAYDQAAFAARG 94
                         57******.**********.3433.4**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.32544102IPR001471AP2/ERF domain
SMARTSM003803.8E-3044108IPR001471AP2/ERF domain
PfamPF008473.7E-114594IPR001471AP2/ERF domain
CDDcd000183.20E-134579No hitNo description
Gene3DG3DSA:3.30.730.107.1E-2745102IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2045103IPR016177DNA-binding domain
PRINTSPR003671.4E-84556IPR001471AP2/ERF domain
PRINTSPR003671.4E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDADECSGWS SSSSSTSSEV GIGSVDTRNK HRWQDASLGN KHDAFIGVRK RPWGKFGAEI  60
RDSTRGGARV WLGTFDTPEA AALAYDQAAF AARGADAILN FPVGRVQQSL HTMADAAAGV  120
SPVLALKRHH SRRMSTTRRS RLIHGRATTS TKTNKNRMRQ QQLAPQIATA SSVSVVAMAV  180
PQPVAAPGHC GVLELEDLGA DYLEELLRMT SEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2438102872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG154400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828667.11e-71dehydration-responsive element-binding protein 3-like
TrEMBLA0A2T7CMM63e-96A0A2T7CMM6_9POAL; Uncharacterized protein
STRINGPavir.Hb01232.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.14e-22octadecanoid-responsive Arabidopsis AP2/ERF 59