PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG164400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 337aa    MW: 35225.1 Da    PI: 4.4246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG164400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-16160209355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr ++ +g+++AeIrd + +g  +r+++g+f+t+e Aa a+++a+ + +g
  Pavir.8KG164400.1.p 160 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWIGTFDTPEAAALAYDQAAFSARG 209
                          68******.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.272159217IPR001471AP2/ERF domain
SMARTSM003805.1E-28159223IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-20159219IPR016177DNA-binding domain
PfamPF008471.5E-12160209IPR001471AP2/ERF domain
CDDcd000183.17E-14160218No hitNo description
PRINTSPR003676.1E-8160171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-26160218IPR001471AP2/ERF domain
PRINTSPR003676.1E-8183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEHELCTSNC YPAAEAAASP TFDLGATDGD MLLQLEAFLV DGIDAEPAEV CSHWSSPSSS  60
SSASSSPEMG AATGFATIGD PQHCWMPGMD DTDDMLMKID AFLLGTDAET EECSDWLSPS  120
SPSSSEAATV SLSRSSQHRL PEADADADAS PGEKRKRPAF IGVRKRPWGK FAAEIRDSTR  180
RGARVWIGTF DTPEAAALAY DQAAFSARGA GAVLNFPVER VRESLGALAL AGAGAGGAGG  240
GSPVLALKRW HSKRTRRRKV SPATESSRNP KPQGLCASQS SDVSGGMAAA VPLQQTTTAP  300
MTCAGQCQCG IAELDDLGDD YLEELLRVVS SELGEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-231602191574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG164400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276837e-75KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828657.11e-136ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3IDY01e-134A0A2S3IDY0_9POAL; Uncharacterized protein
STRINGPavir.Hb01336.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-33ethylene-responsive element binding factor 15