PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG166300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 615aa    MW: 71626.2 Da    PI: 9.3247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG166300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.2e-201181172
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72
                         +fYn+YA+  GFs+r+s+s++ k++++i++rtf+Cs+eg r ++k++ e+++ +r+etr+ C+a++k+++++
  Pavir.8KG166300.1.p 11 DFYNSYARVKGFSIRRSSSHNVKNTTTIKNRTFCCSREGIRGPDKRE-ESSKYSRPETRCMCQARMKISLKD 81
                         6*******************************************999.999******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-161181IPR004330FAR1 DNA binding domain
PfamPF105511.0E-27192285IPR018289MULE transposase domain
PROSITE profilePS509669.78449485IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5458481IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-6460487IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MKFCAEQEAY DFYNSYARVK GFSIRRSSSH NVKNTTTIKN RTFCCSREGI RGPDKREESS  60
KYSRPETRCM CQARMKISLK DGTIIEAQLA SVEAAKAVGI SNKATFDLMA KEAGGIENLG  120
FTREDMKNKL YSKRTLKINQ GDTRGVLEYL EKKTSDEEKF FYSIQVDEDD LTKNIFWTDS  180
KMVADYEVYG DVCFDTTYRK LNDGHPFGLL VGVNNHKKTI IFGAALLFDE TAESFVWLFN  240
TFLAAMSGKK PQTILTNEDA AMAKAIKIVL PESHHRICVW HMNQNACKHL SGVVEEYKKF  300
NTDFQRCIYD QEEEEDFINA WNKLLEKYNL QENEWLKRLF NKKEKWALVY GRNTFSADMV  360
STQRSESMNN ELKGYISVKY NILIFFKHFN RCDFKAIQST PSLKSDLRIL RHVAKIYIPA  420
VFKVFQEQVM QTLNCDLFYC GDIDDEKVYK IKFSTLGDRV NCSCKKFEFV GILCCHALKI  480
LDINNIKKIP EQYIPKRWTM NAKVLHIKSN SETHEDPKTK LSQRRKELSR MFLKLAARAA  540
ESDETYFMAF NSYTRFALCY NLNLNNTCVT TTQLHDQTVM YFFFKQLTFC RNTTARRGYK  600
TKRHHGSRKR KFVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG166300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1W0W5Z80.0A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J04444.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5