PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG172700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 309aa    MW: 33649.4 Da    PI: 10.2427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG172700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.39.2e-26169260185
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+ltpsdv++++rl++pk++a +h        +     ++ l ++d +g++W++++ y+++s+ y+ltkGW++Fv+++gL++gD+v F
  Pavir.8KG172700.1.p 169 FQKALTPSDVGNLNRLIVPKQHAGKHlfvkrsplM-AAGMGVLLDVQDGEGKTWRFRYLYCRSSRIYILTKGWRRFVREKGLQAGDTVAF 257
                          99************************999888751.3447889*********************************************** PP

                          EE- CS
                   B3  83 kld 85 
                          +++
  Pavir.8KG172700.1.p 258 SRS 260
                          954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-31160264IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-25167260No hitNo description
SuperFamilySSF1019362.49E-25167266IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-23169260IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521169276IPR003340B3 DNA binding domain
SMARTSM010191.8E-17169268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELGTKITFA GIDPADEVAA LQPLPPQPQS WRLWGVAPLP NAPHAYGGGQ AVANFTAKHA  60
TNGELAFQAA AHSTVSETDD MLLRHMSTAG DDARLSPWQG GRVRQPAPPS CAREHLFQKA  120
LTPSDVGNLN RLVTADMLRL HMSTTGDDAR QGGRVRQPSS PPCAREHLFQ KALTPSDVGN  180
LNRLIVPKQH AGKHLFVKRS PLMAAGMGVL LDVQDGEGKT WRFRYLYCRS SRIYILTKGW  240
RRFVREKGLQ AGDTVAFSRS AIGPFKQMHI DYWKKKQEDV TADGAIAAVD SPVVMLFGVD  300
IAARRGSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3416628411126DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG172700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828655.11e-121B3 domain-containing protein Os02g0764100-like
SwissprotQ9AWS02e-46Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A0A9IZP52e-50A0A0A9IZP5_ARUDO; Uncharacterized protein
STRINGPavir.Hb01193.1.p1e-134(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-39related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]