PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG180500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 341aa    MW: 34861.9 Da    PI: 5.8996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG180500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20114163255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Pavir.8KG180500.1.p 114 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 163
                          7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-33114172IPR001471AP2/ERF domain
SMARTSM003801.3E-36114177IPR001471AP2/ERF domain
PfamPF008471.1E-13114163IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22114172IPR016177DNA-binding domain
PROSITE profilePS5103225.686114171IPR001471AP2/ERF domain
PRINTSPR003671.1E-11115126IPR001471AP2/ERF domain
CDDcd000181.07E-14122173No hitNo description
PRINTSPR003671.1E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAMAGVGPGD VMSEYHQARE LSTMVSALAH VVASEPWGGD EAPAPRGGGG VPEQQAMHGG  60
YAREVGSYHG VPSPEFAGSE QGSDTQSAGA AAAMEEHHAA ALSGQEGPET PRRRYRGVRQ  120
RPWGKWAAEI RDPHKAARVW LGTFETAEAA ARAYDEAALR FRGSRAKLNF PEDARLHPAS  180
TAAGAAPAPA SAPLAGAAAS TSPAGYHAGA AQGTDYLRYQ MLLQGATGNQ GTLLPFYAGG  240
GGGMSNIYGG GGGGGAMSNP YGGGGGDNTS GFLGSYYSFP PSSVSVATVP SSASSASGYY  300
YSSPYDSHQS ESSAAASDWN WETSMLHWSD SGYPPPPHSQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23115171663ATERF1
3gcc_A2e-23115171663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.189150.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG180500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432474e-73AC243247.1 Panicum virgatum clone PV_ABa073-K05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816726.11e-143glycine, alanine and asparagine-rich protein-like
TrEMBLA0A1E5WKI71e-144A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGPavir.J03755.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-19ethylene response factor 110