PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG183400.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 208aa MW: 21714.8 Da PI: 5.9842

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG183400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	73.1	6.8e-23	9	83	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + w++F++r++++a+g r++r+t sgyWka g+ v+s+ +++++g+kkt+vfy+grap+g kt+ m+eyr+ Pavir.8KG183400.2.p 9 GEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGVVYSSaDRRAIGVKKTMVFYRGRAPSGAKTKYKMNEYRA 83 468**********************************9978889*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.203	1	127	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-24	8	127	IPR003441	NAC domain
Pfam	PF02365	7.0E-12	10	82	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MLCGGAGAGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSSA DRRAIGVKKT 60 MVFYRGRAPS GAKTKYKMNE YRALQHYDAA PDAAAAAGAD GSSSSARAAA PPPQLRSEFS 120 LCRLYTKSGT LRQFDRRPLA AAAAGAAGED PAGPSTAAAA SPPEDDDGSG SSTQQQQQQL 180 AERGADDDDP YGDDAAILDA LLYWPGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	12	85	73	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	12	85	73	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	12	85	73	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	12	85	73	144	NO APICAL MERISTEM PROTEIN
3swm_A	3e-17	1	85	64	147	NAC domain-containing protein 19
3swm_B	3e-17	1	85	64	147	NAC domain-containing protein 19
3swm_C	3e-17	1	85	64	147	NAC domain-containing protein 19
3swm_D	3e-17	1	85	64	147	NAC domain-containing protein 19
3swp_A	3e-17	1	85	64	147	NAC domain-containing protein 19
3swp_B	3e-17	1	85	64	147	NAC domain-containing protein 19
3swp_C	3e-17	1	85	64	147	NAC domain-containing protein 19
3swp_D	3e-17	1	85	64	147	NAC domain-containing protein 19
4dul_A	3e-17	12	85	73	144	NAC domain-containing protein 19
4dul_B	3e-17	12	85	73	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG183400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	3e-79	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	1e-107	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-42	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A3L6RLX7	1e-109	A0A3L6RLX7_PANMI; NAC domain-containing protein 90-like
STRING	Pavir.J02276.1.p	1e-144	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-43	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Pavir.8KG183400.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]