PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG196000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 381aa    MW: 40434.4 Da    PI: 4.9301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG196000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-102472444
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44
                         W t+E++ll++av+++G+ +W+++a +++         ++t+  c++r+
  Pavir.8KG196000.1.p 24 WGTWEELLLACAVRRHGTASWDSVAMEVQsrcpasaaARLTPTGCRLRF 72
                         *****************************66666666555666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00282078IPR001005SANT/Myb domain
SuperFamilySSF466896.89E-52161IPR009057Homeodomain-like
PfamPF002492.5E-92473IPR001005SANT/Myb domain
CDDcd001671.02E-42458No hitNo description
Gene3DG3DSA:1.10.10.609.8E-42460IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAAG GEIWGTWEEL LLACAVRRHG TASWDSVAME VQSRCPASAA  60
ARLTPTGCRL RFRLLHRRFA AGAENGDGGA DADEDPDAAA ADGWVEELRK LRVAELRREV  120
ERYDLSIGSL QSKLKRLTEE RERSISGEAN PPAVKAEEDE EPAAGKGSRE DDAAGGESGR  180
SCRESNSSDL KRPVSDAGTA SAAGDGGAAA REEGEEEAAA AVGVSVDVKG EEVSGESVAG  240
SKEAEKESSD VQSSASPSRR REREGGGEGG EEEETEEASA SPSARPPLPA AESEALLAFL  300
ESVRTSKPGS VFKRRLESQV KKIQFSPPIR FSTRSNKPQK KREEKFTPRV KSEATEPSKH  360
KLPNRLSPPD HLALCRVLYT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.215331e-148root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG196000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820863.11e-120uncharacterized protein LOC112896947
TrEMBLA0A2S3I3Z61e-119A0A2S3I3Z6_9POAL; Uncharacterized protein
STRINGPavir.J33720.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-15DNA-binding bromodomain-containing protein