PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG196600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 95aa MW: 10984.5 Da PI: 10.2695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG196600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.1	1.9e-15	11	78	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 ++Y++YA+++GFs+rks+++ + +++++++++vCs++ ++++++k+ ++++++a+trt C+a+++ + + Pavir.8KG196600.1.p 11 QMYKAYARRIGFSIRKSTTRLR-ADETVYQKHMVCSNQVQQAKHSKH--QTSKENATTRTCCDARIQFSTS 78 58************987775.8888************9999..99*************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-12	11	78	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MSFKSEYDAY QMYKAYARRI GFSIRKSTTR LRADETVYQK HMVCSNQVQQ AKHSKHQTSK 60 ENATTRTCCD ARIQFSTSKF EMPFAPLLGT NHHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG196600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879530.1	4e-19	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8BKB9	6e-34	B8BKB9_ORYSI; Uncharacterized protein
STRING	Sb06g007340.1	3e-33	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15086	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-07	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG196600.1.p