PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG201300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 137aa    MW: 15714.1 Da    PI: 8.5032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG201300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000381545841
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
                  HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKa 41
                         ++r RRd++++  + Lr ++  +   + +Kls +
  Pavir.8KG201300.1.p 15 NDRGRRDNLRKLVDDLRPCVVCL---QETKLSHI 45
                         579********************...9****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.10.101.1E-125129IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562191.13E-156130IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033722.4E-59117IPR005135Endonuclease/exonuclease/phosphatase
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDFSSILIWN VRGLNDRGRR DNLRKLVDDL RPCVVCLQET KLSHISEWDV ASFLGREFSK  60
FVFLPAQQTR GGILIAWRDG TFSVIQHLVH RYSVSVLLCG STRSPWWLTG VYGPQCDEDK  120
ISFLADLREV RSSCPVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG201300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676024.11e-47uncharacterized protein LOC103652163