PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG228100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 539aa    MW: 62730.6 Da    PI: 7.5405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG228100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-1622105990
                 FAR1   9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          + GFsvr+s+ +     +e t r+fvCs eg++ee++ k + k+rr+++ tr+gC+ k+++ +++ +g+w+v+++  + nH+la
  Pavir.8KG228100.1.p  22 DEGFSVRRSYVEWDAGYNELTLRKFVCSHEGFHEEKHMKrEGKQRRPQNITRVGCRVKFVIARQRnTGQWYVKDFIDDQNHPLA 105
                          57************999*****************999885778999****************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1522105IPR004330FAR1 DNA binding domain
PfamPF105511.9E-23198284IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MADLESLLEY NQIVRKMFAS EDEGFSVRRS YVEWDAGYNE LTLRKFVCSH EGFHEEKHMK  60
REGKQRRPQN ITRVGCRVKF VIARQRNTGQ WYVKDFIDDQ NHPLALEDLS CLLRSHRRIS  120
DEQKADILQM EISGIRKHQI FEIQEMQDLY NFCHSHKQGT IAAGDAQTVI RYLRECESGD  180
ADFFFRSMTD KQGHMHLQTN RYNLSLVPFV EVNHHKHTVI FGCGIISHEN SYSYEWLLRT  240
FSEANIQKHH VSMITDGDLA MQRAIRIVWP NTSHRLCRCR IEHNFVRNIN DDKPKEALWV  300
FMYDCCSIEE IERKWLKFLT KNESINARFQ MQLDGKMTLL DLVEHYGTCL SRVRRNMADD  360
DIKALQSKPF TASYASTLEI DAKKRFTPND FVLVQLSIKA ASKCHLIEIL DEDDTEEYIV  420
GRKDKGDIMI YVKCEFTVEG NLKGISCSCH KLQSVGTSCS RIFFVLGQRG EHKPPDCCVL  480
ERWTKGAKSA FPPLRKSTMY EYSATLLRYR DLHNISRDAS FVASHSIEGC DWLKDALL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG228100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.J32630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-38FAR1-related sequence 5