PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG251900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 219aa MW: 24412.6 Da PI: 9.9454

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG251900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.2	6.3e-27	8	86	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ew +Fs +d+kyatg+r+nrat+sgyWk tgk + ++++ +++l g kktLvfykgr+p+g kt+Wvmheyrl Pavir.8KG251900.1.p 8 SGQEW-YFSLQDRKYATGSRTNRATSSGYWKPTGKGRLIITSlsaadDNTLLGFKKTLVFYKGREPTGIKTSWVMHEYRL 86 44566.579999**************************99888877888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.234	1	123	IPR003441	NAC domain
SuperFamily	SSF101941	1.05E-30	5	122	IPR003441	NAC domain
Pfam	PF02365	1.1E-12	12	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPDNARLSGQ EWYFSLQDRK YATGSRTNRA TSSGYWKPTG KGRLIITSLS AADDNTLLGF 60 KKTLVFYKGR EPTGIKTSWV MHEYRLDRDT LMLSGTKLRG SSSSTASNTM LHDEWLLCRI 120 FNRATNLRRP SPFLDDDGLQ GGVDSLIAFK SAAEHFLDAM KSAYNTPLFP LLPPIPCIND 180 HLMQKTDTAK RFEKTAPPQI DAVDSRRQRA TSSDGSVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-25	1	129	62	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-25	1	129	62	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-25	1	129	62	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-25	1	129	62	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-25	1	129	65	174	NAC domain-containing protein 19
3swm_B	2e-25	1	129	65	174	NAC domain-containing protein 19
3swm_C	2e-25	1	129	65	174	NAC domain-containing protein 19
3swm_D	2e-25	1	129	65	174	NAC domain-containing protein 19
3swp_A	2e-25	1	129	65	174	NAC domain-containing protein 19
3swp_B	2e-25	1	129	65	174	NAC domain-containing protein 19
3swp_C	2e-25	1	129	65	174	NAC domain-containing protein 19
3swp_D	2e-25	1	129	65	174	NAC domain-containing protein 19
4dul_A	2e-25	1	129	62	171	NAC domain-containing protein 19
4dul_B	2e-25	1	129	62	171	NAC domain-containing protein 19

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20749	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG251900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Hb00103.1.p	1e-161	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	5e-35	NAC family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG251900.1.p