PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG323200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 181aa MW: 19153.7 Da PI: 10.4404

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG323200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	37	97	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +a++cprC+stntkfCyynny+lsqPr+fC+aCrryWt GGalrn+PvGgg+r+ k+sss Pavir.8KG323200.1.p 37 AEAVRCPRCESTNTKFCYYNNYNLSQPRHFCRACRRYWTMGGALRNIPVGGGCRRAKRSSS 97 6789****************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.9E-33	39	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-25	40	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MQELRSIPGL DGQPFHVAGA PSGLRRAQAA QYQRKAAEAV RCPRCESTNT KFCYYNNYNL 60 SQPRHFCRAC RRYWTMGGAL RNIPVGGGCR RAKRSSSTDA KNPRSNSGST TMTAATATAP 120 ATPSSNSNTA VHVAPPAPIF ADQAAVLASL FPPPPLPLFS FTAMDKVAAS ALLAESNPPT 180 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7271	4e-69	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds up to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG323200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY955493	9e-70	AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822624.1	4e-51	dof zinc finger protein 4-like
Swissprot	Q6Z345	4e-44	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A2S3GST5	9e-50	A0A2S3GST5_9POAL; Uncharacterized protein
STRING	Pavir.J33457.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	8e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Pavir.8KG323200.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]