PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG330800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 195aa    MW: 21824.4 Da    PI: 10.1496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG330800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.73.3e-38131411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGf+F+Ptde++vv+yL++++ +++l+   +i +vdi++++Pw+L     +++ e y+Fs+r  + + g+r++r++ +g Wka+gkd 
  Pavir.8KG330800.1.p  13 LEPGFKFRPTDEDVVVHYLRPRAMNEPLPS-GCIVDVDILSHNPWELV---PEGSVEKYYFSRRVPRWPLGNRRKRTAGDGHWKASGKDV 98 
                          579*************************99.99**************4...3566799******************************** PP

                  NAM  91 evlsk..kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                          +++sk  +g++   vglkkt+vfy+g+ap ge+t+Wvm+eyrl
  Pavir.8KG330800.1.p  99 PIFSKgiNGRVpmmVGLKKTMVFYRGKAPFGENTEWVMEEYRL 141
                          ****8663333677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-414146IPR003441NAC domain
PROSITE profilePS5100539.8713158IPR003441NAC domain
PfamPF023652.0E-2115141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAASMISAAP ILLEPGFKFR PTDEDVVVHY LRPRAMNEPL PSGCIVDVDI LSHNPWELVP  60
EGSVEKYYFS RRVPRWPLGN RRKRTAGDGH WKASGKDVPI FSKGINGRVP MMVGLKKTMV  120
FYRGKAPFGE NTEWVMEEYR LAEAGLMPSH VMRPREGRNL GKCGCAAAVI AKKNDELSEA  180
LRNAIASLKR FLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-3171419140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG330800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828753.11e-122NAC transcription factor NAM-B1-like
TrEMBLA0A2S3IED01e-121A0A2S3IED0_9POAL; Uncharacterized protein
STRINGPavir.Hb00854.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-38NAC domain containing protein 41