PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG336700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 496aa    MW: 56040.8 Da    PI: 6.5116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG336700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.61.2e-14240294256
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                          ++lL++cA+av+++++ +a++lL +++++as +gd++qR+a +ft++L+arl++ 
  Pavir.8KG336700.1.p 240 RTLLISCAQAVATNNHMRARELLMEIKQHASATGDATQRVALCFTKGLEARLVGA 294
                          789*************************************************985 PP
2GRAS145.17e-45299487186373
                 GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          +ed+++e+L+++++E+l+Vn  ++  +l+desv  +   +rd++L+ +k+++P+v++ +  ++++ ++sF++rf e ++yy+alfd l+a
  Pavir.8KG336700.1.p 299 WEDVRIEDLNTNTDEVLVVNDLFSFSTLMDESVFFDRqsPRDTFLSNIKKMRPDVFIQSILNCSC-GSSFVARFREVMSYYTALFDILDA 387
                          799*****************************96554449*************************.679********************* PP

                 GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                          ++pres+ r+++E+++lgr + n++aceg +  +r e++++W+ r ++aG++ +pl++++++ +k  ++k++ + + + e+ ++l++gWk
  Pavir.8KG336700.1.p 388 TMPRESKSRVVLEQFVLGRPALNIIACEGLDLAQRPEKYRQWQVRNQRAGLRLLPLKSRIVEVVKDAVQKHHHKNFLICEDGHWLLQGWK 477
                          ************************************************************************999*************** PP

                 GRAS 364 drpLvsvSaW 373
                          +r L++ S+W
  Pavir.8KG336700.1.p 478 GRILFAHSCW 487
                          ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.2E-12240294IPR005202Transcription factor GRAS
PROSITE profilePS5098518.266272468IPR005202Transcription factor GRAS
PfamPF035142.4E-42299487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MATTPEEFFV KGLMEQSQPP LLEKSSGMSE GCQQHVVPND MMLPYISHML LEDDIDDNEL  60
NDHPALLQVQ QPFAQIISSS SYGANTSNTD SAKDLLQDGR DDDSTLNLNS ALSKGTDAIR  120
AFLKGMEEAN MLLPKDNKQF RGGVQVNQMV QKSSNHSGDK KRYNRDNHTE EEIRTGKAAK  180
MIKDPEENCA NEMLDEMMLH AYDTCIKGMG KLHVSMDTKV DKGNRKKYNK AAKNNMVDIR  240
TLLISCAQAV ATNNHMRARE LLMEIKQHAS ATGDATQRVA LCFTKGLEAR LVGAGSLLWE  300
DVRIEDLNTN TDEVLVVNDL FSFSTLMDES VFFDRQSPRD TFLSNIKKMR PDVFIQSILN  360
CSCGSSFVAR FREVMSYYTA LFDILDATMP RESKSRVVLE QFVLGRPALN IIACEGLDLA  420
QRPEKYRQWQ VRNQRAGLRL LPLKSRIVEV VKDAVQKHHH KNFLICEDGH WLLQGWKGRI  480
LFAHSCWWVA QDTSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG336700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791277.11e-180scarecrow-like protein 34
TrEMBLA0A3L6Q2651e-146A0A3L6Q265_PANMI; GRAS transcription factor
STRINGPavir.Hb00457.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2543445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-54GRAS family protein