PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG384700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 192aa    MW: 21544.3 Da    PI: 9.8725
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG384700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13110154347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++d+ +qlG+g+W+  ++ + ++Rt+ q+ s+ q y
  Pavir.8KG384700.1.p 110 PWTEEEHRKFLDGLRQLGKGDWRGMSKSFVTTRTATQVASHAQRY 154
                          7*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.697103159IPR017930Myb domain
SuperFamilySSF466892.58E-16104159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-15106158IPR006447Myb domain, plants
SMARTSM007171.8E-8107157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10108150IPR009057Homeodomain-like
PfamPF002497.2E-11110154IPR001005SANT/Myb domain
CDDcd001673.85E-9110154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEEKGGQGEP LLPTTSRISE SFHQLAEFWQ TRRPKPATVV LRLFGMDVVA DEEPDDNDIG  60
FELRKSSSMQ NLTIPSADPL LPRGEAGEGK VYASNDLELA SRQQRKKGIP WTEEEHRKFL  120
DGLRQLGKGD WRGMSKSFVT TRTATQVASH AQRYSLRQTN PGKKKRRASL FVVGIADFSD  180
DQVSTLMPFH R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.268481e-112root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG384700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516101e-84AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
GenBankAK3624571e-84AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10.
GenBankAK3702741e-84AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12.
GenBankAK3731651e-84AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795278.11e-84transcription factor MYBS2-like
SwissprotB8BI937e-48MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC517e-48MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A3L6SAI02e-84A0A3L6SAI0_PANMI; Protein REVEILLE 2-like
STRINGPavir.Ib02262.1.p3e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-33MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]